Free access also for commercial users.
This tool uses pseudogenomes of 1135 Arabidopsis thaliana accessions from the 1001 Genomes Project.
Functional impacts of non-synonymous SNPs: Analysis of amino acid substitutions, changes in physico-chemical properties (polarity, charge), and effects on protein domains. SNP and haplotype analyses: Computation of CDS and protein haplotypes, their frequencies, their geographic distributions, and their associations with phenotypic traits or environmental factors. Analysis for chosen set of accessions: All results and tables are available for sets of accessions chosen by the user GWAS input matrices and computation: Computation of GWAS with SNP or haplotype subsets chosen by the user